Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs34965641 | chr5:79942376 | G/A | 0.000105 | 214 | 18.65 | 14.83 | 9.77 | KM Plot |
| KIRP | rs34970627 | chr16:4530035 | C/T | 3.38E-6 | 214 | 16.45 | 12.63 | 10.83 | KM Plot |
| KIRP | rs34980617 | chr12:99124597 | T/TA | 0.000323 | 209 | 16.43 | 16.43 | 13.17 | KM Plot |
| KIRP | rs34985819 | chr16:20442653 | G/A | 0.000361 | 211 | 16.45 | 16.72 | 1.73 | KM Plot |
| KIRP | rs34985882 | chr10:63398701 | A/C | 0 | 213 | 18.25 | 8.07 | 1.17 | KM Plot |
| KIRP | rs35001169 | chr6:28187632 | T/G | 1.99E-7 | 213 | 16.43 | 16.43 | 9.77 | KM Plot |
| KIRP | rs35002862 | chr1:95256671 | A/AT | 0.000237 | 209 | 13.17 | 14.85 | 17.27 | KM Plot |
| KIRP | rs35003209 | chr5:176672974 | TA/T | 7.26E-7 | 206 | 9.77 | 20.72 | 15.07 | KM Plot |
| KIRP | rs35016036 | chr6:28314880 | C/T | 1.98E-7 | 214 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs35021467 | chr16:74480569 | T/C | 0.000564 | 210 | 14.68 | 19.15 | 15.12 | KM Plot |
| KIRP | rs35024636 | chr10:63478420 | G/T | 0 | 213 | 18.03 | 6.2 | 3.38 | KM Plot |
| KIRP | rs35028554 | chr10:102026439 | A/AT | 3.76E-7 | 213 | 15.88 | 19.83 | 5.7 | KM Plot |
| KIRP | rs35030260 | chr6:28305508 | G/A | 1.98E-7 | 214 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs35037868 | chr6:27759115 | G/C | 1.98E-7 | 213 | 16.47 | 13.6 | 9.77 | KM Plot |
| KIRP | rs35044849 | chr6:28667669 | A/G | 3.07E-7 | 208 | 15.88 | 13.6 | 9.77 | KM Plot |